Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015890490.1_cds_XP_016445206.1_40186
CDS Infomation

[gene=LOC107770412] [db_xref=GeneID:107770412] [protein=auxin response factor 1-like] [protein_id=XP_016445206.1] [location=join(3780..3825,4348..4463,4704..4799,4881..4937,5054..5206,5317..5401,5849..5939,6051..6215,6681..6800,6924..6999,7503..7665,7743..8197,8501..8691,9245..9392)] [gbkey=CDS]
Sequence

ATGGCACACCTTGCGGCAAATCACTTCGGTGGCGGGGCTCATCCAGTGGCTCCAAATGAT
GCATTATACAAGGAACTCTGGCATGCCTGTGCTGGACCTCTTGTAACGGTTCCTCGTGAA
GGGGAAAGAGTTTATTATTTCCCACAGGGTCACATGGAACAGCTTGAAGCATCGACACAT
CAGGGATTAGACCAACAACTTCCTTCTTTCAATTTGCCAGCTAAAATATTATGCAAAGTG
ATGAATATTCAACTTCGGGCTGAGTCAGAGACTGATGAGGTGTATGCACAGATAACTCTG
CTTCCTGAACTAGATCAAGGCGAGATCACAAGGCCTTATCCTCCTCTCCCTGAACCTCAA
AAGTGCACTGTCCATTCGTTTTGCAAGACTCTTACTGCATCTGATACAAGCACCCATGGT
GGGTTCTCTGTTCTTCGGAGGCATGCAGATGAATGTTTGCCCCCACTGGATATGACCCAA
CAGCCACCATGGCAGGAATTGGTTGCTAGTGATCTACATGGCAATGAATGGCACTTTCGC
CACATTTTTCGAGGTCAACCTAGGCGCCACTTGCTCACAACTGGGTGGAGTGTTTTTGTC
AGTGCAAAAAAGTTGGTCGCTGGAGATGCTTTCATCTTTCTCAGGGGAGAAAATGGGGAG
CTTCGAGTTGGTGTTAGGAGACTCATGAGACAGCTAAACAATATGCCATCTTCTGTTATT
TCAAGTCACAGTATGCATCTGGGTGTTCTTGCAACTGCATCTCATGCCATCTCGACTGGG
ACCCTCTTCTCTGTGTATTATAAGCCTAGGACTAGTCAGTCTGAATTCATTGTCAGTGTG
AACAAATATCTTGAAGCACGAAATCACAAGCTTTCTGTTGGGATGAGGTTTAAGATGAGA
TTTGAGGGTGAGGAAGTTCCAGAAAGAAGGTTCAGTGGAACAATTGTTGGTGTTGGTGAA
AATACATCATCTAGATGGCCTGATTCTGAATGGAGATCCTTGAAGGTTCACTGGGATGAA
CCATCGTCAATCTTGCGTCCAGATAGGGTTTCACCATGGGAAATAGAACCGCTTGTCACA
GCAACGCCTACAAACACCCAGCCTCAAAGAAATAAGCGTGCTCGACCTTCAGTTTTACCG
TCGCCAGTGCAAGAACTTCCTGCTTTAGGAATGTGGAAGTCTCCTGGTGATTCTCCCTCA
TCGTTCCCATACTGTGATCCATCTCGTGGGCGAGATCTCTACGCATCACCAAAACTTTCT
GCTGCAAGTGGCCTGGGTTATGGCGAGAATGGTTCCATGCCTCTTTCCTCCAAATCTATG
TACTGGTCAAGTCAATCAGATACATGTACAGAGTCTATCACAACACCGGCTAGTGAAAAG
AGACCGGCTAATGGATATAGGTTATTCGGAATTGAGTTGCTGGATCGTCCAACTGTAGAT
GAAGCTTCACCAGTTGCTATGCCGAGTGCTCTTGTGGAGAATCAGCCAGCTGCATCTTTA
GATGTTGATTCAGGAAACTCAGAACCATCAAATCCTATTCCTTCAGTAAGTTGTGAGCCT
GAAAAGTCATCTCTGAGGTCTCCCCACGAGTCTCAAAGCAAACAAATCCGCAGTTGCACT
AAGGTGCATATGCAAGGGAAGGCAGTTGGGAGGGCAGTTGATCTCACAAGGTTAGATAGT
TATGAAGATCTGCTTAAGAAATTGGAGGAGATGTTTGAAATTGAAGGCGAACTTCGTGAT
TCAACCAAGAAATGGCAGGTAGTCTACACAGATGATGAGGATGACATGATGATGGTTGGA
GATGATCCATGGCATGAGTTCTGCAGCATGGTTAGAAAAATTTACGTCTATACAGCTGAG
GAAGCCAAAAAACTTTCACCAAAGATAAAACTTCCTGTTGACGACGTGAAACCAGGCAAA
CCAGTTTCGGGTGCAACTGTTAGCAATGAGGAGAAAGCATAG

Peptide Sequence

PEP ID

XP_016445206.1
PEP Infomation

PREDICTED: auxin response factor 1-like [Nicotiana tabacum]
Sequence

MAHLAANHFGGGAHPVAPNDALYKELWHACAGPLVTVPREGERVYYFPQGHMEQLEASTH
QGLDQQLPSFNLPAKILCKVMNIQLRAESETDEVYAQITLLPELDQGEITRPYPPLPEPQ
KCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQQPPWQELVASDLHGNEWHFR
HIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVI
SSHSMHLGVLATASHAISTGTLFSVYYKPRTSQSEFIVSVNKYLEARNHKLSVGMRFKMR
FEGEEVPERRFSGTIVGVGENTSSRWPDSEWRSLKVHWDEPSSILRPDRVSPWEIEPLVT
ATPTNTQPQRNKRARPSVLPSPVQELPALGMWKSPGDSPSSFPYCDPSRGRDLYASPKLS
AASGLGYGENGSMPLSSKSMYWSSQSDTCTESITTPASEKRPANGYRLFGIELLDRPTVD
EASPVAMPSALVENQPAASLDVDSGNSEPSNPIPSVSCEPEKSSLRSPHESQSKQIRSCT
KVHMQGKAVGRAVDLTRLDSYEDLLKKLEEMFEIEGELRDSTKKWQVVYTDDEDDMMMVG
DDPWHEFCSMVRKIYVYTAEEAKKLSPKIKLPVDDVKPGKPVSGATVSNEEKA

Transcript Sequence

Gene sequence data has not been registered.